{ "_id": "6a140a95acfb0bcc41d3a4d0", "Package": "BASiNET", "Title": "Classification of RNA Sequences using Complex Network Theory", "Version": "0.0.5", "Authors@R": "c(\nperson(\"Eric Augusto\", \"Ito\",\nemail = \"ericaugustoito@hotmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-0030-6881\")),\nperson(\"Fabricio Martins\", \"Lopes\",\nemail = \"fabricio@utfpr.edu.br\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-8786-3313\")))", "Description": "It makes the creation of networks from sequences of RNA,\nwith this is done the abstraction of characteristics of these\nnetworks with a methodology of threshold for the purpose of\nmaking a classification between the classes of the sequences.\nThere are four data present in the 'BASiNET' package,\n\"sequences\", \"sequences2\", \"sequences-predict\" and\n\"sequences2-predict\" with 11, 10, 11 and 11 sequences\nrespectively. These sequences were taken from the data set used\nin the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin,\n2014) , these sequences are used\nto run examples. The BASiNET was published on Nucleic Acids\nResearch, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio;\nPEREIRA, Felipe; LOPES, Fabrício, 2018)\n.", "License": "GPL-3", "Encoding": "UTF-8", "biocViews": "Software, BiologicalQuestion, GenePrediction", "RoxygenNote": "6.1.0", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 08:34:18 UTC", "User": "root" }, "Author": "Eric Augusto Ito [aut]\n(), Fabricio Martins\nLopes [aut, cre] ()", "Maintainer": "Fabricio Martins Lopes ", "Config/pak/sysreqs": "libglpk-dev make default-jdk libicu-dev libxml2-dev\nzlib1g-dev", "Repository": "https://fabriciomlopes.r-universe.dev", "Date/Publication": "2022-08-19 07:50:25 UTC", "RemoteUrl": "https://github.com/cran/BASiNET", "RemoteRef": "HEAD", "RemoteSha": "774d97a18f5622d3c8009c6bb452976a55654756", "MD5sum": "ee4263f7a8ffab263f0c2bb8a1ae0ff9", "_user": "fabriciomlopes", "_type": "src", "_file": "BASiNET_0.0.5.tar.gz", "_fileid": "57ce38f51705f45a1767e67b9ed5e56f2fa13dcfec6d2eb019a71877c2f71054", "_filesize": 444071, "_sha256": "57ce38f51705f45a1767e67b9ed5e56f2fa13dcfec6d2eb019a71877c2f71054", "_created": "2026-05-25T08:34:18.000Z", "_published": "2026-05-25T08:38:45.553Z", "_distro": "noble", "_jobs": [ { "job": 77681824835, "time": 192, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7194725409" }, { "job": 77681824907, "time": 170, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7194719323" }, { "job": 77681824840, "time": 172, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7194713566" }, { "job": 77681824837, "time": 168, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7194708402" }, { "job": 77681380955, "time": 199, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7194673386" }, { "job": 77681824823, "time": 128, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7194707843" }, { "job": 77681824865, "time": 137, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7194710746" }, { "job": 77681824856, "time": 222, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7194733284" }, { "job": 77681824854, "time": 127, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7194707629" } ], "_buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/BASiNET", "_commit": { "id": "774d97a18f5622d3c8009c6bb452976a55654756", "author": "Fabricio Martins Lopes ", "committer": "cran-robot ", "message": "version 0.0.5\n", "time": 1660895425 }, "_maintainer": { "name": "Fabricio Martins Lopes", "email": "fabricio@utfpr.edu.br", "login": "fabriciomlopes", "description": "", "uuid": 9141789, "orcid": "0000-0002-8786-3313" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "igraph", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "RWeka", "role": "Imports" }, { "package": "randomForest", "role": "Imports" }, { "package": "rmcfs", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "rJava", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "software", "biologicalquestion", "geneprediction", "openjdk" ], "_stars": 0, "_contributors": [ { "user": "ericito", "count": 3, "uuid": 18197427 }, { "user": "fabriciomlopes", "count": 1, "uuid": 9141789 } ], "_userbio": { "uuid": 9141789, "type": "user", "name": "Fabricio M Lopes" }, "_downloads": { "count": 272, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BASiNET" }, "_mentions": 3, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/BASiNET.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "fabriciomlopes", "_cranurl": false, "_releases": [ { "version": "0.0.2", "date": "2017-12-18" }, { "version": "0.0.3", "date": "2018-04-18" }, { "version": "0.0.4", "date": "2018-10-02" }, { "version": "0.0.5", "date": "2022-08-19" } ], "_exports": [ "classification" ], "_help": [ { "page": "classification", "title": "Performs the classification methodology using complex network theory", "topics": [ "classification" ] }, { "page": "createGraph2D", "title": "Creates a two-dimensional graph between a measure and the threshold", "topics": [ "createGraph2D" ] }, { "page": "createNet", "title": "Creates an untargeted graph from a biological sequence", "topics": [ "createNet" ] }, { "page": "measures", "title": "Abstracting Characteristics on Network Structure", "topics": [ "measures" ] }, { "page": "minMax", "title": "Minimum and maximum", "topics": [ "minMax" ] }, { "page": "reschedule", "title": "Rescales the results between values from 0 to 1", "topics": [ "reschedule" ] }, { "page": "threshold", "title": "Applies threshold on the network from a value", "topics": [ "threshold" ] } ], "_rundeps": [ "BiocGenerics", "Biostrings", "cli", "cpp11", "crayon", "data.table", "dplyr", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "igraph", "IRanges", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "pillar", "pkgconfig", "plyr", "R6", "randomForest", "RColorBrewer", "Rcpp", "reshape2", "rJava", "rlang", "rmcfs", "RWeka", "RWekajars", "S4Vectors", "S7", "scales", "Seqinfo", "stringi", "stringr", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr", "XVector", "yaml" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.10+7-1~24.04", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_vignettes": [ { "source": "BASiNET.Rmd", "filename": "BASiNET.html", "title": "BASiNET - Classification of RNA sequences using complex network theory", "author": "Eric Augusto Ito", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Instalation", "Classification", "Predict" ], "created": "2018-04-18 21:27:32", "modified": "2022-08-19 07:50:25", "commits": 3 } ], "_score": 2.4771212547196626, "_indexed": true, "_nocasepkg": "basinet", "_universes": [ "fabriciomlopes" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.5", "date": "2026-05-25T08:36:46.000Z", "distro": "noble", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "5611c403746da099e1f7d1d596e040438e7040215e6f9b19be8a793754130e82", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.6.0", "os": "linux", "version": "0.0.5", "date": "2026-05-25T08:36:33.000Z", "distro": "noble", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "5ecad904fb35d258791732f0cf9fe6aaa7f8b9725dcb8a26b0e667e72f3fc8d4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.5.3", "os": "mac", "version": "0.0.5", "date": "2026-05-25T08:36:35.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "45c3126eedb22912401dd504321d6fef24b0b175ecc0ea5fd6a4821845aef937", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.6.0", "os": "mac", "version": "0.0.5", "date": "2026-05-25T08:36:11.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "ad5675802259cfc72692a6ad5a505b0fc2caa82fe92bb929067dc772dfe7e970", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.5", "date": "2026-05-25T08:36:47.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "3045ed9aff68cee22fc8b81054bb6b14c8b7985979372b615c262cd364c5ad71", "status": "success", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.7.0", "os": "win", "version": "0.0.5", "date": "2026-05-25T08:35:40.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "abea940cdbde3b2f120bf6b87b9b34e558546ffd68e8b45bb6779061f2a55214", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.5.3", "os": "win", "version": "0.0.5", "date": "2026-05-25T08:37:17.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "559896a71cf229ce7a159508ee98e981a2510d8720822f66f55defa724c65476", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" }, { "r": "4.6.0", "os": "win", "version": "0.0.5", "date": "2026-05-25T08:35:36.000Z", "commit": "774d97a18f5622d3c8009c6bb452976a55654756", "fileid": "76e0490d44c361928884d1e8031661d7403c5965449a456e6f106772c6c16139", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391278533" } ] }