{ "_id": "6a140befacfb0bcc41d3a8b0", "Package": "BASiNETEntropy", "Title": "Classification of RNA Sequences using Complex Network and\nInformation Theory", "Version": "0.99.6", "Authors@R": "c(\nperson(\"Murilo Montanini\", \"Breve\",\nemail = \"murilo_breve@hotmail.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-5781-0480\")),\nperson(\"Matheus Henrique\", \"Pimenta-Zanon\",\nemail = \"matheus.pimenta@outlook.com\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-0698-6360\")),\nperson(\"Fabricio Martins\", \"Lopes\",\nemail = \"fabricio@utfpr.edu.br\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-8786-3313\")))", "Description": "It makes the creation of networks from sequences of RNA,\nwith this is done the abstraction of characteristics of these\nnetworks with a methodology of maximum entropy for the purpose\nof making a classification between the classes of the\nsequences. There are two data present in the 'BASiNET' package,\n\"mRNA\", and \"ncRNA\" with 10 sequences. These sequences were\ntaken from the data set used in the article (LI, Aimin; ZHANG,\nJunying; ZHOU, Zhongyin, 2014) ,\nthese sequences are used to run examples.", "License": "GPL-3", "Encoding": "UTF-8", "biocViews": "Software, BiologicalQuestion, GenePrediction,\nFunctionalPrediction, Network, Classification", "RoxygenNote": "7.2.0", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-25 08:40:32 UTC", "User": "root" }, "Author": "Murilo Montanini Breve [aut]\n(), Matheus Henrique\nPimenta-Zanon [aut] (),\nFabricio Martins Lopes [aut, cre]\n()", "Maintainer": "Fabricio Martins Lopes ", "Config/pak/sysreqs": "libglpk-dev libxml2-dev zlib1g-dev", "Repository": "https://fabriciomlopes.r-universe.dev", "Date/Publication": "2023-08-16 19:30:34 UTC", "RemoteUrl": "https://github.com/cran/BASiNETEntropy", "RemoteRef": "HEAD", "RemoteSha": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "MD5sum": "022bbabd1193f7ad66b5a9198984cfb4", "_user": "fabriciomlopes", "_type": "src", "_file": "BASiNETEntropy_0.99.6.tar.gz", "_fileid": "9e763d7754d71d34bfe3c1cf142dec5f60bcdae0ddb1b5a6724311926e3966cf", "_filesize": 231764, "_sha256": "9e763d7754d71d34bfe3c1cf142dec5f60bcdae0ddb1b5a6724311926e3966cf", "_created": "2026-05-25T08:40:32.000Z", "_published": "2026-05-25T08:44:30.992Z", "_distro": "noble", "_jobs": [ { "job": 77682667650, "time": 199, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7194825046" }, { "job": 77682667637, "time": 206, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7194826960" }, { "job": 77682667639, "time": 86, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7194795836" }, { "job": 77682667684, "time": 106, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7194801232" }, { "job": 77682239404, "time": 185, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7194772771" }, { "job": 77682667638, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7194804298" }, { "job": 77682667700, "time": 139, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7194809818" }, { "job": 77682667663, "time": 124, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7194806029" }, { "job": 77682667707, "time": 108, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7194801729" } ], "_buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/BASiNETEntropy", "_commit": { "id": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "author": "Fabricio Martins Lopes ", "committer": "cran-robot ", "message": "version 0.99.6\n", "time": 1692214234 }, "_maintainer": { "name": "Fabricio Martins Lopes", "email": "fabricio@utfpr.edu.br", "login": "fabriciomlopes", "description": "", "uuid": 9141789, "orcid": "0000-0002-8786-3313" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "igraph", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "randomForest", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "software", "biologicalquestion", "geneprediction", "functionalprediction", "network", "classification" ], "_stars": 0, "_contributors": [ { "user": "fabriciomlopes", "count": 6, "uuid": 9141789 } ], "_userbio": { "uuid": 9141789, "type": "user", "name": "Fabricio M Lopes" }, "_downloads": { "count": 255, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BASiNETEntropy" }, "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/BASiNETEntropy.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "fabriciomlopes", "_cranurl": false, "_releases": [ { "version": "0.99.1", "date": "2022-01-12" }, { "version": "0.99.2", "date": "2022-03-24" }, { "version": "0.99.3", "date": "2022-07-06" }, { "version": "0.99.4", "date": "2022-07-07" }, { "version": "0.99.5", "date": "2022-08-26" }, { "version": "0.99.6", "date": "2023-08-16" } ], "_exports": [ "classify", "curveofentropy", "training" ], "_help": [ { "page": "classify", "title": "Performs the classification methodology using complex network and entropy theories", "topics": [ "classify" ] }, { "page": "createedges", "title": "Creates an untargeted graph from a biological sequence", "topics": [ "createedges" ] }, { "page": "creatingDataframe", "title": "Creates a feature matrix using complex network topological measures", "topics": [ "creatingDataframe" ] }, { "page": "curveofentropy", "title": "Creates an entropy curve", "topics": [ "curveofentropy" ] }, { "page": "entropy", "title": "Calculates the entropy", "topics": [ "entropy" ] }, { "page": "filtering", "title": "Filters the edges", "topics": [ "filtering" ] }, { "page": "matrixmultiplication", "title": "Compares the matrices", "topics": [ "matrixmultiplication" ] }, { "page": "maxentropy", "title": "Calculates the maximum entropy", "topics": [ "maxentropy" ] }, { "page": "preprocessing", "title": "Rescales the results between values from 0 to 1", "topics": [ "preprocessing" ] }, { "page": "selectingEdges", "title": "Selects the edges of the adjacency matrix", "topics": [ "selectingEdges" ] }, { "page": "training", "title": "Trains the algorithm to select the edges that maximize the entropy", "topics": [ "training" ] } ], "_readme": "https://github.com/cran/BASiNETEntropy/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "Biostrings", "cli", "cpp11", "crayon", "generics", "glue", "igraph", "IRanges", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "randomForest", "rlang", "S4Vectors", "Seqinfo", "vctrs", "XVector" ], "_vignettes": [ { "source": "BASiNETEntropy.Rmd", "filename": "BASiNETEntropy.html", "title": "BASiNETEntropy", "author": "BREVE, M., PIMENTA-ZANON, M. and LOPES, F.", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Instalation", "Classification" ], "created": "2022-01-12 09:52:53", "modified": "2022-07-05 21:10:02", "commits": 2 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "basinetentropy", "_universes": [ "fabriciomlopes" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.99.6", "date": "2026-05-25T08:43:20.000Z", "distro": "noble", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "2537b6abdcb9627a9a0ac2fd43355b97c57d79085565ea02cc78f71cc2712dae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.6.0", "os": "linux", "version": "0.99.6", "date": "2026-05-25T08:43:25.000Z", "distro": "noble", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "8ee0534e82fe38bbbf6707f53b80624828bc5ba0bacf92585c9adb1573a6ba9a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.5.3", "os": "mac", "version": "0.99.6", "date": "2026-05-25T08:41:50.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "504e565eab11d94d27257d2d9353e2138b6125e1c48a44befaffb08af6c840fc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.6.0", "os": "mac", "version": "0.99.6", "date": "2026-05-25T08:42:07.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "06292236dded02593ff6496526f0c5ef47e4f688cbabefb87fd26a95628d4fdc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.6.0", "os": "wasm", "version": "0.99.6", "date": "2026-05-25T08:42:47.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "f2753ee65e3b673571978e2b517f482640478613c75b914f6368f6d0200328d7", "status": "success", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.7.0", "os": "win", "version": "0.99.6", "date": "2026-05-25T08:42:09.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "c95486e992f888d6b83e21fc901b00141aba58b617092fc96b8755ecbd3ee33c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.5.3", "os": "win", "version": "0.99.6", "date": "2026-05-25T08:42:08.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "862919bb239c46dfa5696a7832ada67a5af25d386693db9f29d62dce05f324d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" }, { "r": "4.6.0", "os": "win", "version": "0.99.6", "date": "2026-05-25T08:41:43.000Z", "commit": "a9d9de0d2a14b2cd2fb8b5bb50aa7255b839141c", "fileid": "2aacd0411af1191fbb6d9067622f27a928c679a0a24f6360e19b1a59f40f6bd1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/fabriciomlopes/actions/runs/26391548127" } ] }