Package: BASiNET 0.0.5
BASiNET: Classification of RNA Sequences using Complex Network Theory
It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
Authors:
BASiNET_0.0.5.tar.gz
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BASiNET.pdf |BASiNET.html✨
BASiNET/json (API)
# Install 'BASiNET' in R: |
install.packages('BASiNET', repos = c('https://fabriciomlopes.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarebiologicalquestiongeneprediction
Last updated 2 years agofrom:774d97a18f. Checks:OK: 6 WARNING: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 14 2024 |
R-4.5-win | OK | Nov 14 2024 |
R-4.5-linux | WARNING | Nov 14 2024 |
R-4.4-win | OK | Nov 14 2024 |
R-4.4-mac | OK | Nov 14 2024 |
R-4.3-win | OK | Nov 14 2024 |
R-4.3-mac | OK | Nov 14 2024 |
Exports:classification
Dependencies:askpassBiocGenericsBiostringsclicolorspacecpp11crayoncurldata.tabledplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegridExtragtablehttrigraphIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6randomForestRColorBrewerRcppreshape2rJavarlangrmcfsRWekaRWekajarsS4VectorsscalesstringistringrsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectoryamlzlibbioc