Package: BASiNET 0.0.5

BASiNET: Classification of RNA Sequences using Complex Network Theory

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.

Authors:Eric Augusto Ito [aut], Fabricio Martins Lopes [aut, cre]

BASiNET_0.0.5.tar.gz
BASiNET_0.0.5.zip(r-4.7)BASiNET_0.0.5.zip(r-4.6)BASiNET_0.0.5.zip(r-4.5)
BASiNET_0.0.5.tgz(r-4.6-any)BASiNET_0.0.5.tgz(r-4.5-any)
BASiNET_0.0.5.tar.gz(r-4.7-any)BASiNET_0.0.5.tar.gz(r-4.6-any)
BASiNET_0.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BASiNET/json (API)

# Install 'BASiNET' in R:
install.packages('BASiNET', repos = c('https://fabriciomlopes.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarebiologicalquestiongenepredictionopenjdk

2.48 score 7 scripts 272 downloads 3 mentions 1 exports 48 dependencies

Last updated from:774d97a18f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK192
source / vignettesOK199
linux-release-x86_64OK170
macos-release-arm64OK168
macos-oldrel-arm64OK172
windows-develOK137
windows-releaseOK127
windows-oldrelOK222
wasm-releaseOK128

Exports:classification

Dependencies:BiocGenericsBiostringsclicpp11crayondata.tabledplyrfarvergenericsggplot2gluegridExtragtableigraphIRangesisobandlabelinglatticelifecyclemagrittrMatrixpillarpkgconfigplyrR6randomForestRColorBrewerRcppreshape2rJavarlangrmcfsRWekaRWekajarsS4VectorsS7scalesSeqinfostringistringrtibbletidyselectutf8vctrsviridisLitewithrXVectoryaml

BASiNET - Classification of RNA sequences using complex network theory

Eric Augusto Ito

Rendered fromBASiNET.Rmdusingknitr::rmarkdownon May 25 2026.

Last update: 2022-08-19
Started: 2018-04-18